Industry:
Medicine and Biology
Headquarters:
London, England
Title:
CTO/Founder
Company:
Kuano
Company Industry:
Biotechnology
Company Website:
kuano.ai
Company Linkedin:
linkedin.com/company/kuano
Company Size:
1-10
Current Job Duration:
5 yrs 10 mos
Country:
United Kingdom
Work Experience:
Title: CTO/Founder
Company: Kuano
Company URL: https://www.linkedin.com/company/kuano/
Industry: Biotechnology
Company Size: 1-10
Location: London, England, United Kingdom
Country: None
Employment Type: None
Start At: 03-2020
Ends At: Present
Description: None
Title: Computational Chemistry Lead
Company: None
Company URL: None
Industry: None
Company Size: None
Location: London, United Kingdom
Country: None
Employment Type: None
Start At: 08-2019
Ends At: 03-2020
Description: None
Title: Chief Scientific Officer
Company: None
Company URL: https://www.linkedin.com/company/ensemblemd-ltd/
Industry: None
Company Size: None
Location: London, United Kingdom
Country: None
Employment Type: None
Start At: 01-2017
Ends At: 08-2019
Description: None
Title: UCL
Company: None
Company URL: https://www.linkedin.com/school/university-college-london/
Industry: None
Company Size: None
Location: None
Country: None
Employment Type: None
Start At: 05-2016
Ends At: 08-2019
Description: In my current role I develop molecular simulation approaches to predict the strength of small molecule binding to protein targets for drug discovery and personalised medicine applications. Most recently looking to combine physical simulations with machine learning to better predict resistance to anti-cancer drugs.
As part of this role I have been responsible for:
• Processing and analysing large quantities of simulation, experimental and clinical data
•Leading a small team of developers of the BAC 2.0 tool designed to automate molecular simulations using multiple applications and the HTBAC workflow management tool
•Leading development of the EasyVVUQ tool to automate verification, validation and uncertainty quantification for high performance computing applications
•Research representative on the UCL Research Data Repository project board, involving collating and communicating user needs and providing feedback on project design and implementation
•Contribute to reviews and panels informing strategic decisions in European HPC (through the EXDCI project and PRACE scientific steering committee)
•Supervision of Masters and Ph.D. students, including both day today direction of research, deadline management and coordination with primary supervisors
•Organization of the ”Free Energy Calculations from Molecular Sim-ulation” workshop - in collaboration with the CompBioMed andBioExcel projects.
•Named investigator on the INSPIRE project (supported by the USdepartment of INCITE program) combining molecular dynamics and machine learning to study cancer drug resistance.
• Contributing to the writing of grant proposals. Including those successfully approved for the CompBioMed2 (€8m) and VECMA (€4m) EU projects., In order to gain greater understanding of how modelling could be used to add value to experimental work I joined the Structural immunology group in 2013. In this position I was the lead developer in the UK/US collaborative project CCP-SAS. The goal of the project was to create open-source software for analysing small angle scattering data on complex systems using atomistic and coarse grained modelling approaches. I also conducted my modelling and simulation projects designed to under the structure and function of antibodies and other immune system proteins.
In this role I was responsible for:
• Leading development of SCT, a Python package for the comparison of atomistic models to small angle scattering data.
• Developing structural modelling packages (PDBRx, PDBScan), and underlying libraries (SASSIE, SasMol)
• Integrating software tools into a common web interface for all project software (made available at https://sassie-web.chem.utk.edu/sassie2/)
•Training users in the use of CCP-SAS tools, including teaching at a summer school at ILL in Grenoble, France, My first post doctoral position was in the UCL Centre of Computational Science. My focus was the use molecular dynamics simulations to investigate drug resistance in HIV enzymes (primarily protease and reverse transcriptase). I combined the development of tools and methodologies that rapidly and accurately compute binding free energies with mechanistic studies which provide insight into the molecular mechanisms of drug resistance. I also contributed to projects investigating drug binding to the EGFR tyrosine kinase domain and the interactions of RNA with clay environments.
This role involved extensive collaboration with external groups, especially in the context of several large EU projects. Under the umbrella of the EU CHAIN project I instigated a collaboration with the Viroscience lab at Erasmus Medical Center in the Netherlands in order to gain access to their expertise in both clinical and experimental evaluation of HIV-1 drug resistance. I was also part of the team developing the the Binding Affinity Calculator (BAC) workflow tool, used to setup and execute simulations within the EU projects Virolab and ContraCancrum.
During my time in this post I became an associate fellow of the 2020 science project and mentored five masters and PhD students.
In addition to my research work my role, I have also been responsible for running and maintaining a local computer cluster and approximately 20 workstations.
Education:
School: University College London, U. of London
Degree: Doctor of Philosophy (PhD), Chemistry
Activities: None
School: University College London, U. of London
Degree: Master of Research (MRes), Organised student seminar series
Activities: None
School: University of York
Degree: Master of Physics (MPhys), Computational Physics
Activities: None
Headline:
Molecular modeller, coder & CTO/Founder at Kuano