David Wright Top-Executive

I am the CTO/co-Founder of Kuano - a startup using quantum simulation and machine learning to design more effective and safer enzyme inhibitors.

This work builds on my current work using computational chemistry and biophysical simulation, alongside machine learning approaches, to understand how drugs interact with their targets on a molecular level. My career in the field started in academia where I developed and automated simulation and analysis methods for free energy calculations and structural biology applications. I then moved into industry at GTN - combining physical simulation methods (molecular dynamics and quantum mechanics) with data driven approaches. These experiences built the skillset as a researcher, software engineer and team leader that I am now using to lead the technical team at Kuano.

Much of my research has involved the application of molecular dynamics and free energy calculations to gain qualitative insight and quantitative information on mutational effects on enzyme function and drug interactions. To date my work has concentrated on proteins from two major pathologies, HIV and cancer. In the field of HIV I have worked on the antiretroviral drug target enzymes protease and reverse transcriptase. In the cancer domain, I have studied the epidermal growth factor receptor (EGFR), inhibitation of the tyrosine kinase domain of which is used to treat non-small-cell lung cancer, and histone deacetylase 8 (HDAC8) which has been suggested as a possible target for neuroblastoma differentiation therapy. I have strong interests in using atomistic models in the context of multiscale models and systems biology and medicine. I have also studied the use of atomistic simulation techniques to analyse data from small angle scattering experiments (SAXS and SANS).

The execution of large scale molecular dynamics simulations requires considerable computational power and I have gained extensive experience using a variety of codes on high performance computing (HPC) resources. As part of this work I have developed the BAC and EasyVVUQ tools, for automating molecular simulation and uncertainty quantification workflows respectively.


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Industry: Medicine and Biology
Headquarters: London, England
Title: CTO/Founder
Company: Kuano
Company Industry: Biotechnology
Company Website: kuano.ai
Company Linkedin: linkedin.com/company/kuano
Company Size: 1-10
Current Job Duration: 5 yrs 10 mos
Country: United Kingdom
Work Experience: Title: CTO/Founder Company: Kuano Company URL: https://www.linkedin.com/company/kuano/ Industry: Biotechnology Company Size: 1-10 Location: London, England, United Kingdom Country: None Employment Type: None Start At: 03-2020 Ends At: Present Description: None Title: Computational Chemistry Lead Company: None Company URL: None Industry: None Company Size: None Location: London, United Kingdom Country: None Employment Type: None Start At: 08-2019 Ends At: 03-2020 Description: None Title: Chief Scientific Officer Company: None Company URL: https://www.linkedin.com/company/ensemblemd-ltd/ Industry: None Company Size: None Location: London, United Kingdom Country: None Employment Type: None Start At: 01-2017 Ends At: 08-2019 Description: None Title: UCL Company: None Company URL: https://www.linkedin.com/school/university-college-london/ Industry: None Company Size: None Location: None Country: None Employment Type: None Start At: 05-2016 Ends At: 08-2019 Description: In my current role I develop molecular simulation approaches to predict the strength of small molecule binding to protein targets for drug discovery and personalised medicine applications. Most recently looking to combine physical simulations with machine learning to better predict resistance to anti-cancer drugs. As part of this role I have been responsible for: • Processing and analysing large quantities of simulation, experimental and clinical data •Leading a small team of developers of the BAC 2.0 tool designed to automate molecular simulations using multiple applications and the HTBAC workflow management tool •Leading development of the EasyVVUQ tool to automate verification, validation and uncertainty quantification for high performance computing applications •Research representative on the UCL Research Data Repository project board, involving collating and communicating user needs and providing feedback on project design and implementation •Contribute to reviews and panels informing strategic decisions in European HPC (through the EXDCI project and PRACE scientific steering committee) •Supervision of Masters and Ph.D. students, including both day today direction of research, deadline management and coordination with primary supervisors •Organization of the ”Free Energy Calculations from Molecular Sim-ulation” workshop - in collaboration with the CompBioMed andBioExcel projects. •Named investigator on the INSPIRE project (supported by the USdepartment of INCITE program) combining molecular dynamics and machine learning to study cancer drug resistance. • Contributing to the writing of grant proposals. Including those successfully approved for the CompBioMed2 (€8m) and VECMA (€4m) EU projects., In order to gain greater understanding of how modelling could be used to add value to experimental work I joined the Structural immunology group in 2013. In this position I was the lead developer in the UK/US collaborative project CCP-SAS. The goal of the project was to create open-source software for analysing small angle scattering data on complex systems using atomistic and coarse grained modelling approaches. I also conducted my modelling and simulation projects designed to under the structure and function of antibodies and other immune system proteins. In this role I was responsible for: • Leading development of SCT, a Python package for the comparison of atomistic models to small angle scattering data. • Developing structural modelling packages (PDBRx, PDBScan), and underlying libraries (SASSIE, SasMol) • Integrating software tools into a common web interface for all project software (made available at https://sassie-web.chem.utk.edu/sassie2/) •Training users in the use of CCP-SAS tools, including teaching at a summer school at ILL in Grenoble, France, My first post doctoral position was in the UCL Centre of Computational Science. My focus was the use molecular dynamics simulations to investigate drug resistance in HIV enzymes (primarily protease and reverse transcriptase). I combined the development of tools and methodologies that rapidly and accurately compute binding free energies with mechanistic studies which provide insight into the molecular mechanisms of drug resistance. I also contributed to projects investigating drug binding to the EGFR tyrosine kinase domain and the interactions of RNA with clay environments. This role involved extensive collaboration with external groups, especially in the context of several large EU projects. Under the umbrella of the EU CHAIN project I instigated a collaboration with the Viroscience lab at Erasmus Medical Center in the Netherlands in order to gain access to their expertise in both clinical and experimental evaluation of HIV-1 drug resistance. I was also part of the team developing the the Binding Affinity Calculator (BAC) workflow tool, used to setup and execute simulations within the EU projects Virolab and ContraCancrum. During my time in this post I became an associate fellow of the 2020 science project and mentored five masters and PhD students. In addition to my research work my role, I have also been responsible for running and maintaining a local computer cluster and approximately 20 workstations.
Education: School: University College London, U. of London Degree: Doctor of Philosophy (PhD), Chemistry Activities: None School: University College London, U. of London Degree: Master of Research (MRes), Organised student seminar series Activities: None School: University of York Degree: Master of Physics (MPhys), Computational Physics Activities: None
Headline: Molecular modeller, coder & CTO/Founder at Kuano